Comparison of price, cost and performance of major sequencers in the market

Comparison of price, cost and performance of all sequencers

2014-01-17   Chen Yuxue Gene  

Comparison of performance and price of major sequencers in the market

  • Instrument: HiSeq X

    • Instrument Price ( USD ): $ 1,000,000/ set (must buy from 10 units)

    • Length measurement: 2*150

    • Maximum data yield at one time: 1.6~1.8 T ( two flowcells)

    • Time to run once: 3 days

    • Data production for one year of operation: 219T

    • Reagent fee per G data ( USD ): $7

    • Average base interpretation error rate: 0.2%

    • Detailed technical performance: http://mp.weixin.qq.com/s?__biz=MzA4NzE0MTYwOQ==&mid=10013823&idx=1&sn=c93684980ea4c689d9906cc0e19c3f7c#rd

    • Official information link: http://res.illumina.com/documents/products/datasheets/datasheet-hiseq-x-ten.pdf


  • Instrument: HiSeq 2500 Upgrade

    • Instrument price ( USD ): 740,000

    • Length measurement: 125*2, high-throughput mode; 250*2, fast mode

    • Maximum data output at one time: 0.9~1 T (2*125 mode, two flowcells)

    • Time to run once: 6 days

    • Data production for one year of operation: 60T

    • Reagent fee per G data ( USD ): $30

    • Average base interpretation error rate: 0.1%

    • Factory date limit: HiSeq can be upgraded after 2013, and cannot be upgraded before.

    • Official technical information: http://res.illumina.com/documents/products/datasheets/datasheet_hiseq2500.pdf

    • video:

  • Instrument: HiSeq 2500 not upgraded version

    • Instrument price ( USD ): 740,000

    • Length measurement: 2*150

    • Maximum data output at one time: 180G/run (fast mode 2*150, 2 Flowcell; the output of high-throughput mode is the same as HiSeq 2000, see next box)

    • Time to run once: 40 hours

    • Data production for one year of operation: 32T

    • Reagent fee per G data ( USD ): $ 55

    • Average base interpretation error rate: 0.260%

  • Instrument: HiSeq 2000

    • Instrument price ( USD ): 654,000

    • Length measurement: 2*100

    • Maximum data production at a time: 600G/run (2*100 mode, two flowcells)

    • Time to run once: 11 days (2*100 mode, two flowcells)

    • Data production for one year of operation: 20T

    • Reagent fee per G data ( USD ): $41

    • Average base interpretation error rate: 0.260%

  • Instrument: NextSeq 500

    • Instrument price ( USD ): 250,000

    • Length measurement: 2*150

    • Maximum data production at a time: 100~120 G/run (one Flowcell)

    • Run time: 29 hours

    • Data production for one year of operation: 29T

    • Reagent fee per G data ( USD ): $41

    • Average base interpretation error rate: 0.2%

    • Official technical information: http://res.illumina.com/documents/products/datasheets/datasheet-nextseq-500.pdf

    • video:

  • Instrument: MiSeq

    • Instrument price ( USD ): 99,000

    • Length measurement: 2*300

    • Maximum data production at a time: 13.2~15G ( one Flowcell)

    • Time to run once: 65 hours (300*2 mode)

    • Data production for one year of operation: 1.6T

    • Reagent fee per G data ( USD ): $86

    • Average base interpretation error rate: 0.200%

    • Official technical information: http://res.illumina.com/documents/products/datasheets/datasheet_miseq.pdf

    • Official video:

  • Instrument: Proton with PI chip ( Proton current status)

    • Instrument price ( USD ): 243,000

    • Length measurement: 200

    • Maximum data production at a time: 10G

    • Run time: 2~4 hours

    • Data production for one year of operation: 11T (three runs per day)

    • Reagent fee per G data ( USD ): $80

    • Average base interpretation error rate: 1%

    • Official video:

  • Instrument: Proton with PII chip (future state, maybe PII chip can be launched in 2014 )

    • Instrument price ( USD ): 243,000

    • Length measurement:?

    • Maximum data production at a time: 30G

    • Time to run once:?

    • Data production for one year of operation: 33T (three runs per day)

    • Reagent fee per G data ( USD ):?

    • Average base interpretation error rate:?

  • Instrument: Ion Torrent PGM

    • Instrument price ( USD ): 80,000

    • Length measurement: 400

    • Maximum data output at one time: 1~2G

    • Run time: 7.3 hours (400bp), 4.4 hours (200bp)

    • Operating data production year: 1.4T (a day to run three run)

    • Reagent fee per G data ( USD ): $ 450 (based on 318 chips and 400bp read length)

    • Average base interpretation error rate: 1.00%

  • instrument:   PacBio RS

    • Instrument price ( USD ): 965,000

    • Length measurement: 10000bp

    • Maximum data production at a time: 0.1G/run

    • Time of operation: 2 hrs

    • Data production for one year of operation: 146G (running 4 runs per day)

    • Reagent fee per G data ( USD ):   $2000

    • Average base interpretation error rate: 12%

    • Official video:

  • instrument:   454 GS Junior (the instrument has been discontinued )

    • Instrument price ( USD ): 108,000

    • Length measurement: 400

    • Maximum data yield at one time: 0.035G

    • Time of operation: 8 hrs

    • Data production for one year of operation:   12G

    • Reagent fee per G data ( USD ):   $31000

    • Average base interpretation error rate: homopoleer greater than 6 bases is not allowed

    • Official video:

  • instrument:   454 FLX (the instrument has been discontinued )

    • Instrument price ( USD ): 500,000

    • Length measurement: 1000

    • Maximum data production at a time: 0.5G

    • Run time: 7.5 hrs

    • Data production for one year of operation:   180G

    • Reagent fee per G data ( USD ):   $16400

    • Average base interpretation error rate: homopoleer greater than 6 bases is not allowed

  • instrument:   Nanopore

    • Instrument Price ( USD ): 1000

    • Length measurement: ?

    • One maximum data yield: ?

    • Time to run once:   ?

    • Data production for one year of operation:   ?

    • Reagent fee per G data ( USD ): ?

    • Average base interpretation error rate: ?

    • Official video:

  • instrument:   ABI 3730XL   Classic generation sequencer ( 96 channels of capillary)

    • Instrument price ( USD ): 357,000

    • Length measurement: 900

    • Maximum data production at a time: 81,600Bp

    • Run time: 2 hours

    • Data production for one year of operation: 300M

    • Reagent cost per reaction of (USD): USD 1.0 / 900Bp

    • Average base interpretation error rate: 0.001%



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